PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10370_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 282aa    MW: 31284.7 Da    PI: 9.8038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10370_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.18.7e-44311882134
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 
                                           + kkdrhski T+ g+RdRR+Rls+e+a++fFdLqd LGfdk+skt+eWLl+q++ aike +g+         
  cra_locus_10370_iso_1_len_1494_ver_3  31 TSKKDRHSKINTAHGPRDRRMRLSLEVARKFFDLQDTLGFDKASKTVEWLLTQSNYAIKEVMGNmplargtgg 103
                                           689********************************************************************** PP

                                   TCP  66 ..........ssssaseceaesssssasnsssg......kaaksaakskksqksaasalnlakesrakarara 122
                                                      ss+ secea+s   ++++ +++       + k + k+k++++  ++ +++a+esr++ar+ra
  cra_locus_10370_iso_1_len_1494_ver_3 104 ggggggtansVSSTTSECEAVSGIDESGTTNENqpgpasISVKLKIKNKEKKACRTALHKVARESRKNARERA 176
                                           ****98876533333678666666666655555667764444444477777777777888888********** PP

                                   TCP 123 rertrekmrikn 134
                                           r+rt ek+r  n
  cra_locus_10370_iso_1_len_1494_ver_3 177 RKRTMEKKRFIN 188
                                           ******988655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4331184IPR005333Transcription factor, TCP
PROSITE profilePS5136934.1943391IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.879166183IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAADLPKTNN ASDVNESRIT TEKMNITRKR TSKKDRHSKI NTAHGPRDRR MRLSLEVARK  60
FFDLQDTLGF DKASKTVEWL LTQSNYAIKE VMGNMPLARG TGGGGGGGGT ANSVSSTTSE  120
CEAVSGIDES GTTNENQPGP ASISVKLKIK NKEKKACRTA LHKVARESRK NARERARKRT  180
MEKKRFINNG QEIMDHSYLL NRSSYEESGG GIQLGAKFNN HQSNSYDQGL KEAVDYAAAA  240
DHSNLGNWNF PQNAHEISHE QHFTSDFDNY CGKPWEATCN NL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068TT007e-57A0A068TT00_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256